Updating bayesian priors
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Note: All email addresses in this page have their "@" replaced with "_at_" to minimize spam. Toolboxes: AAL | AAL2 | ACID | AICHA | ALI | ALVIN | AMAT | Analyze Movie | Anatomy | AQu A | Art Repair | aslm | ASLtbx | at4fmri | aws4SPM | BFAST3D | Brain Net Viewer | Brainnetome | Brede Query | Bruker2nifti | bspmview | CAT | CCAf MRI | CLASS | Clinical | Complexity | conn | Conn Ex T | CPCA | DAi SS | DICOMCD_Import | Diffusion_II | DPABI | DPARSF | DRIFTER | EMS | Extract Vals | FASL | FAST | f ECM | FDR | Field Map | fieldmap_undistort | Field Trip | f MRIPower | f OSA | g PPI | Graph Var | Grid CAT | Grocer | HV | IBASPM | i Brain AT | i Brain LT | INRIAlign | IBZM_tool | ISAS | lead-dbs | lesion_gnb | LI | Log Transform | Mantis | MARINA | MARS | Mars Bar | MASCOI | mf Box | Masking | Masks | MIP-C | MM | multifocal | MRTOOL | MRM | NIRS-SPM | NPBayes | NS | PETPVE12 | Ortho | Phys IO | PSPM | QModeling | REST | rfxplot | Robust WLS | SAf E | SAMIT | SCRalyze | SDM | Simple ROIBuilder | Sn PM | Spike Det | spm_wavelet | SPMd | SPMMouse | SSM | SUIT | Surf Rend | Sw E | TDT | TOM | UF2C | Unwarp2 | Var Tbx | VDB | Volumes | WBM | WSPM | WFU_Pick Atlas | xj View | XMLTools | ASLtbx | BENtbx | SVRLSMtbx | GIFT Utilities: Ave LI | Brain Magix | Bruker2Analyze | CBMG-Tools | Design_Magic | dicom2nifti | Dyn PET | Easy_ROI | Easy_Volumes | FDRill | Fluctuation | f Toolbelt | FAD | GA | GE2SPM | JG | L2S | log_roi_batch | LMGS | Matlab TFCE | Motion | mri_toolbox | MSU | Orth1 | PCT | pvconv | r2agui | SEM | slice_overlay | TSDiff Ana | TSU | i TT | VBMtools | VIS | vision To SPM | Voi Tool Batch Utilities: aa | Auto SPET | Batch AAL | KULscripts | parallelize_matlabbatch | spm_segment | SPMJobs12 | spm2-batch | spm2batch | spm2Batch | spmbatch | spmjob | X_batch | zephyr Templates: Baboon | Brain Dev_Atlas | Cerebellum | CCHMC_Pediatric | Dementia_PET | Ovine | Macaca_Fascicularis | Macaca_Fascicularis_PET | Macaca_Mulatta | Macaca_Nemestrina | Rat | s CBT | SPMtemplates | UNC_Pediatric | Zebra_Finch Summary: Implementation of a new parcellation of the orbitofrontal cortex in the automated anatomical labeling atlas, as described in Rolls et al. Author: Gin URL: Summary: The Artefact correction in diffusion MRI (ACID) toolbox is an academic software toolkit for pre-processing of diffusion MRI data, estimation of DTI indices and normalisation of DTI index maps, which fully integrates into the batch system of SPM8.
The atlas is based on the analysis of connectional architecture with in vivo multi-modal MRI data during the last 3 years.
Author: Congying Chu, Lingzhong Fan, Tianzi Jiang URL: Summary: Brede Query plugin for SPM5 - enables coordinate-based meta-analytic search of related literature for brain regions directly from SPM5 environment.
The coordinate-based search is performed using Finn Aarup Nielsen's Brede Database.
Works with coordinates in Talairach and MNI space, MNI-to-Talairach transformations are available (Brett and Lancaster transformations).
Author: Paul Mazaika URL: ASLtbx is a Matlab and SPM based toolkit for processing arterial spin labeling (ASL) perfusion MRI data.
Please contact the respective extension authors with questions and problems (though .
The methods correct for large motions, and automatically detect and remove artifact noise in the data.
Viewing tools allow quality checking at every step in the analysis.
I'm currently only distributing the SPM5-based version, but the SPM2(or 8)-based version can be obtained through email.
The function for quantifying cerebral blood flow should be SPM independent except the image reading and writing functions from SPM.
Author: Ze Wang URL: Allow to obtain a threshold for cluster FDR - the method fits a Gamma-Gaussian mixture model to the SPM-T and finds the optimal threshold (crossing between noise and activation). Author: Chris Filo Gorgolewski and Cyril Pernet URL: Summary: Structural adaptive smoothing f MRI data as described in Tabelow et al. Author: Chiara D'Alonzo, Devy Hoffmann and Karsten Tabelow URL: Extends SPM's Bayesian single-subject f MRI analysis to allow for estimation by MCMC and the Spatial VB method as described in Siden et al. Author: Per Siden URL: https://github.com/psiden/BFAST3D Summary: Brain Net Viewer is a brain network visualization tool, which can help researchers to visualize structural and functional connectivity patterns from different levels in a quick, easy, and flexible way.